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Building a Future Free of Age-Related Disease

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Cellular Reprogramming Rejuvenates Multiple Organs in Mice

In a preprint showcased in bioRxiv, scientists have shown that a single cycle of partial cellular reprogramming can reverse multiple age-related changes in mice.

Starting from a blank slate

As was first shown in 2006 by a group led by Shinya Yamanaka, introduction of four transcription factors (proteins that influence gene expression) can make differentiated cells revert to a pluripotent, stem-cell-like state [1]. These four Yamanaka factors are abbreviated as OSKM. Since then, other combinations of reprogramming factors have been suggested, but the four basic Yamanaka factors still attract most of the interest.

On their way back to pluripotency, cells become rejuvenated, in much the same way that an aged egg cell gives rise to a brand-new organism. Scientists have been trying for years to use Yamanaka factors to rejuvenate somatic cells but without making them lose their cellular identity, as this can lead to cancer and the formation of teratomas, ghastly tumors consisting of cells of multiple types [2]. This so-called partial reprogramming is one of the most coveted goals in geroscience, pursued by both Google’s biotech company Calico and the newborn Jeff Bezos-backed Altos Labs.

What can one cycle do?

Partial reprogramming via several cycles of OSKM induction has been attempted with encouraging results, such as a significant lifespan extension in progeric mice [3]. In this new pre-print paper, a group of researchers studied the effect of a single such cycle, using several techniques. First, they analyzed methylation patterns of DNA that strongly correlate with aging, which is the basis of methylation clocks that measure biological age. Second, they studied the transcriptome – how a cycle of reprogramming affects gene transcription. Finally, they measured the levels of several metabolites in the blood serum.

This research, which is still waiting to be peer reviewed, was done on a strain of genetically modified mice with additional copies of OSKM genes that can be transiently turned on by the drug doxycycline. The researchers treated 55-week-old mice (a solid middle age for these rodents) with a relatively low dose of doxycycline for one week and then followed them up for another four weeks. As controls, they used age-matched mice that had not undergone doxycycline treatment along with young mice.

Interestingly, in these genetically modified mice, OSKM genes react to doxycycline differently in various tissues. The pancreas is the most responsive organ, with OSKM expression rising sharply with the commencement of the treatment. Indeed, the results of the treatment were also most pronounced in the pancreas, but even there, it did not lead to irreversible morphological changes such as teratoma formation.

Rather than using one of the established methylation clocks, the researchers first compared the methylation patterns of old and young mice. Clear differences were detected, with the methylation profiles of old OSKM-treated mice falling between those of young and old untreated animals. 36% of the age-related methylation changes identified in the study were reversed by a single cycle of OSKM induction.

OSKM against the hallmarks of aging

The scientists then analyzed the transcriptomes of young versus old mice and identified differentially expressed genes. Yet again, old OSKM-treated mice landed between young and old controls, indicating partial rejuvenation. Most genes upregulated by OSKM in old mice were those whose expression declined with age, while genes downregulated by OSKM were those upregulated by aging.

The researchers took a closer look at some sets of genes firmly associated with aging processes, such as mTOR signaling. As expected, this gene-set was upregulated in old versus young control mice. Conversely, the gene-set that governs DNA replication was downregulated with age. OSKM treatment reverted many of those changes back to the youthful phenotype. The scientists concluded that OSKM treatment resulted in a “positive reconfiguration of the transcriptome against key hallmarks of aging”.

Spleen, liver, and blood

As mentioned above, pancreas is especially receptive to OSKM induction, but the scientists observed similar, if less conspicuous, patterns in two other organs: the spleen and liver. They also found that OSKM treatment had reversed some age-related changes in the levels of some blood metabolites, such as those involved in collagen production.

Some changes induced by the OSKM treatment were noticeable at its start, while others only began to appear after the treatment ended. Overall, about half of the changes disappeared after 2 weeks. This tells us that some initial effects of transient cellular reprogramming are truly transient and that future treatments based on cellular reprogramming will probably consist of multiple cycles.

Conclusion

If these findings withstand peer review, they will contribute a lot to our understanding of partial cellular reprogramming using Yamanaka factors. As the rapid evolution of biotechnologies makes it easier and cheaper to perform multi-omic analysis, we will be seeing more papers addressing multiple aspects of aging, such as methylation, gene expression, and metabolism.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Literature

[1] Takahashi, K., & Yamanaka, S. (2006). Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. cell, 126(4), 663-676.

[2] Abad, M., Mosteiro, L., Pantoja, C., Cañamero, M., Rayon, T., Ors, I., … & Serrano, M. (2013). Reprogramming in vivo produces teratomas and iPS cells with totipotency features. Nature, 502(7471), 340-345.

[3] Ocampo, A., Reddy, P., Martinez-Redondo, P., Platero-Luengo, A., Hatanaka, F., Hishida, T., … & Belmonte, J. C. I. (2016). In vivo amelioration of age-associated hallmarks by partial reprogramming. Cell, 167(7), 1719-1733.

Turning back the clock

A Current Overview of Rejuvenation Techniques

Vadim Gladyshev and his team have published a review in Aging Cell about the current techniques and innovations in rejuvenation biotechnology, providing an overview of how these researchers see the state of the field.

The reversibility of aging

The reviewers begin by discussing the connection between the perceived irreversibility of aging and the lack of regeneration of many tissues in adult humans. They then contrast this with species in which this regeneration does occur, such as the limbs of certain salamanders [1] and in the heart tissue of newborn mice [2].

The paper then mentions a couple of methods by which this rejuvenation might be achieved. These are epigenetic reprogramming, which the researchers explain has been used to regenerate nerve axons after eye injury [3], and drug-based interventions, such as Greg Fahy’s approach towards reversing thymic involution [4].

The necessity of biomarkers

Critically, the researchers do not make the mistake of categorizing aging as a single variable that is shifted up or down. Instead, they list three broad metrics by which age reversal may be categorized: molecular damage, cellular functionality, and physiological improvement. They then go on to state that functional interventions that can be classified as truly reversing aging will reverse these phenotypes at multiple levels.

However, in order to identify which approaches actually show promise in effecting real-world age reversal, consistent sets of measurements must be used. The researchers note that physiological markers are often subjective and useful only in older animals, and mice must be sacrificed at multiple time points in order for their organs to be analyzed thoroughly.

Measurements based on molecular changes, such as epigenetics, however, do not share this problem. The researchers dive into the field of -omics, pointing out that the epigenome, transcriptome, and immunome can all be analyzed. They list multiple notable clocks, including PhenoAge and the vaunted GrimAge, and point out a large body of research showing that induced pluripotent stem cells (iPSCs) are biologically younger according to these clocks.

Systemic molecules and tissue transplantation

Ever since the Conboy research team discovered the true importance of the systemic environment on cellular behavior back in 2005, discovering that cells change their behavior due to its influence [5], many researchers have looked further into the potential benefits of replacing or removing certain molecules in the bloodstream.

While much research has focused on the benefits of introducing young blood into older animals, such as by connecting old and young animals together via heterochronic parabiosis or by introducing plasma fractions into older animals [6], other research has discovered that there are contaminants in old blood that contribute to aging and that simple dilution is enough to cause positive changes [7]. This is what Dr. Gladyshev classifies as the “deleteriome”: the toxic compounds and by-products that stimulate biological aging [8].

The researchers also discuss the transplanation of tissues, such as a study in which introducing youthful bone marrow into aged animals increased their lifespan by 12% [9] along with a brain tissue study showing that embryonic neurons could be integrated into the brains of adult animals [10].

Reprogramming and iPSCs

The researchers also thoroughly discuss the effects of cellular reprogramming and iPSCs, topics with which much of the rejuvenation community is very familiar. They cite a very long list of research studies showing that iPSCs are substantially epigenetically younger than their original dermal fibroblasts, with some clocks even reporting negative ages.

Along with the study in axonal regeneration in repairing eye injuries [3], the researchers cite a potentially very promising study in which human muscle cells were exposed to an mRNA treatment that caused them to become rejuvenated, according to multiple metrics, while still remaining functional muscle cells [11].

Naturally, the researchers also reiterate the main caveat with transient expression of the Yamanaka factors in the rejuvenation of somatic cells: if such factors are expressed for too long, such a treatment could rejuvenate cells all the way back to pluripotency, destroying their ability to function.

Embryonic development

This paper points out that there must be a minimum point of the age of cells, and as this occurs soon after the fusion of sperm and egg cells, there must be some sort of rejuvenative effect that turns these aged germ cells into a young embryo. Epigenetic clocks were employed in order to discover its existence and its effects [12].

This review returns to the concept of damage dilution, suggesting that the various byproducts of aging that are present in the oocyte are diluted through the multiple divisions of a newly formed embryo, thereby reducing their harmful effects.

Conclusion

Obviously, this paper does not purport to discuss the entirety of the rejuvenation biotechnology space, and it makes no mention of genomics nor does it discuss the extracellular matrix. While senescent cells are mentioned, their effects on the systemic environment through the senescence-associated secretory phenotype (SASP) are not, which some readers might see as a glaring oversight. However, Dr. Gladyshev and his team provide an enlightening perspective towards the current state of the rejuvenation field.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.
Literature

[1] Haas, B. J., & Whited, J. L. (2017). Advances in decoding axolotl limb regeneration. Trends in Genetics, 33(8), 553-565.

[2] Bryant, D. M., O’Meara, C. C., Ho, N. N., Gannon, J., Cai, L., & Lee, R. T. (2015). A systematic analysis of neonatal mouse heart regeneration after apical resection. Journal of molecular and cellular cardiology, 79, 315-318.

[3] Lu, Y., Brommer, B., Tian, X., Krishnan, A., Meer, M., Wang, C., … & Sinclair, D. A. (2020). Reprogramming to recover youthful epigenetic information and restore vision. Nature, 588(7836), 124-129.

[4] Fahy, G. M., Brooke, R. T., Watson, J. P., Good, Z., Vasanawala, S. S., Maecker, H., … & Horvath, S. (2019). Reversal of epigenetic aging and immunosenescent trends in humans. Aging cell, 18(6), e13028.

[5] Conboy, I. M., Conboy, M. J., Wagers, A. J., Girma, E. R., Weissman, I. L., & Rando, T. A. (2005). Rejuvenation of aged progenitor cells by exposure to a young systemic environment. Nature, 433(7027), 760-764.

[6] Horvath, S., Singh, K., Raj, K., Khairnar, S., Sanghavi, A., Shrivastava, A., … & Katcher, H. L. (2020). Reversing age: dual species measurement of epigenetic age with a single clock. bioRxiv.

[7] Mehdipour, M., Skinner, C., Wong, N., Lieb, M., Liu, C., Etienne, J., … & Conboy, I. M. (2020). Rejuvenation of three germ layers tissues by exchanging old blood plasma with saline-albumin. Aging (Albany NY), 12(10), 8790.

[8] Gladyshev, V. N. (2016). Aging: progressive decline in fitness due to the rising deleteriome adjusted by genetic, environmental, and stochastic processes. Aging cell, 15(4), 594-602.

[9] Guderyon, M. J., Chen, C., Bhattacharjee, A., Ge, G., Fernandez, R. A., Gelfond, J. A., … & Li, S. (2020). Mobilization-based transplantation of young-donor hematopoietic stem cells extends lifespan in mice. Aging cell, 19(3), e13110.

[10] Falkner, S., Grade, S., Dimou, L., Conzelmann, K. K., Bonhoeffer, T., Götz, M., & Hübener, M. (2016). Transplanted embryonic neurons integrate into adult neocortical circuits. Nature, 539(7628), 248-253.

[11] Sarkar, T. J., Quarta, M., Mukherjee, S., Colville, A., Paine, P., Doan, L., … & Sebastiano, V. (2020). Transient non-integrative expression of nuclear reprogramming factors promotes multifaceted amelioration of aging in human cells. Nature communications, 11(1), 1-12.

[12] Kerepesi, C., Zhang, B., Lee, S. G., Trapp, A., & Gladyshev, V. N. (2021). Epigenetic clocks reveal a rejuvenation event during embryogenesis followed by aging. bioRxiv.

Objecting to Rejuvenation is Objecting to Medicine

Some people are uneasy about the idea of extending human healthy lifespan by using rejuvenation technologies that target the aging process directly. Even people who accept the possibility that such therapies can be developed are not always convinced that developing them is a good idea.

Interestingly enough there are only a few arguments that most people use. These arguments can actually be easily adapted to make a case against the medicine that already exists, which the vast majority of people on the planet currently benefit from—and the consensus is virtually universal that people who do not yet benefit from it should be given this opportunity as soon as possible.

Meanwhile, back in medieval Europe…

The question is: would people who accept these arguments as valid objections to rejuvenation accept them also as valid objections against “normal” medicine? For example, how many present-day people would agree with what these two people from medieval Europe are talking about?

A – Did you hear about John’s son?

B – Yes, he came down with a fever and never recovered. What a tragedy.

A – Indeed. He and his wife had lost three other children to a fever before.

B – Oh, that’s terrible. Did they try to ask for a doctor’s help?

A – They couldn’t afford it for the other children, but when a fourth one became ill, they were so desperate about it that they did all they could to find the money. Anyway, not even the doctor could save the child’s life, even with all the leeches and poultices at his disposal.

B – Of course, I know nothing about medicine, but sometimes I think doctors don’t either. Their practices are a bit… scary, and as far as I have heard, most people they treat die anyway.

A – That may be, but doctors still have the best wisdom and techniques, at least for those who can afford them.

B – Who knows, maybe one day, doctors will actually know how to cure us for real. It could be as simple as drinking a potion or eating some sort of biscuit containing specific medicinal herbs, and in a few days, you’re back on your feet, no matter the disease.

A – That seems like fantasy to me. Doctors have existed for centuries, and they never managed to perform such miracles. If this were at all possible with knowledge and technique alone, wouldn’t one of them have managed to do so by now? Besides, perhaps it is for the best to leave things the way they are; doctors have gone far enough into God’s domain, and I don’t even want to imagine what would happen if they went even farther.

B – That is true. Surely, there must be a reason for all the diseases that plague us. Common folks are more affected, true, but they also take nobles on occasion. It’s difficult to say if this is because commoners sin more than nobles and that this is God’s way of punishing them or because they are more pious and God wants to call them to Himself sooner, but it is obvious that the will of Providence is at play.

A – Exactly. But I think there is more than this to it. Maybe the reason why diseases exist is to make our lives less miserable. Maybe they are blessings in disguise.

B – I don’t understand. They do cause a lot of suffering, not only to the diseased but also their families.

A – That is true, but how much more suffering would they endure if they went on living, especially among us commoners? It might explain why diseases affect common people more than the nobility. They live better lives, so it makes sense for them to live longer and enjoy it; but what about us? Our lives are harder and deprived of all the comforts and luxuries that rich people can afford. Is it worth living longer for us?

B – You speak truth, and I also think that if, one day, doctors will really be able to cure everyone of certain ailments, this will only make poor people’s lives worse. Very few people can afford the services of doctors even though they aren’t of much use; imagine how expensive it would be if they actually could cure you! Rich people would be healthy, and the rest of us would simply have to die knowing that they could be saved if only they had the money.

A – You are right, it is definitely better if there is no cure for anyone rather than a cure that is only for some. But, still, I dream of a day when medicine eventually becomes cheaper, or maybe the commoners won’t be so poor.

B – A day when even the likes of you and me could live in a fairly comfortable house, with our basic necessities covered, without having to work so hard every day to bring just a little food to the table, and while being able to afford the services of a doctor whenever we need one? You dream of Heaven on Earth, friend; it won’t happen until Judgment Day.

A – We won’t be able to achieve this ourselves, even centuries from now?

B – Again, it hasn’t happened until now, I don’t see why it should happen later. Even if it did, the consequences would be even more dire. It’s hard enough as it is to produce enough food for everyone, and if doctors could cure all diseases and everyone was able to afford these cures, there would be far too many mouths to feed. Therefore, in His infinite wisdom, the good God has decided that some of us must fall prey to disease.

A – I see your point, but in such a world where doctors can treat all ailments with their own knowledge, maybe we would be able to produce more food with less work, so that hundreds of millions, maybe even billions, could eat every day, while farming would not be as laborious.

B – You sure have a wild imagination! And how could that be accomplished, pray tell?

A – Perhaps there might be more machines that do work in place of animals, faster and better. Possibly even in place of people.

B – Machines that work the fields without a person maneuvering them? Walking water mills? Clockwork horses? Oh! How about a sewing machine to go with our spinning wheel? My wife would love such a thing, if it could ever exist.

A – We have some machines for some tasks. Why could we not have more?

B – Because they could never work, that’s why. I sure hope you’re never going to talk such nonsense with others, because not everyone has my sense of humor.

A – Maybe you are right. It was a bit of a stretch; windmills and water mills must sit where they are, after all. Diseases may be a necessary evil, as well. I’ve seen people who survived ailments like the one that killed John’s son, and as they grew older, their lives became more and more miserable. Old age was killing them more slowly and with far more cruelty than fever or plague. A poor old man dies on the street if he has no family to care for him or if his family cannot afford it. I would rather die the way John’s son did, surrounded by my loved ones, than as a crippled old man begging under a bridge.

B – Now you’re talking sense, and this is probably one of the most compelling reasons why we should leave diseases alone. Again, maybe it makes sense for the royalty to live that long, because they will not end up dying like old beggars, but for the rest of us, that would be a curse.

A – True. Besides, I suppose that at some point, one would get tired of living and would rather go. I guess this must be why even people who don’t die early in life eventually die of old age; even if you are part of the upper class, what can you possibly look forward to after you’ve seen your children and grandchildren grow up? Even if you know how to read and have a taste for music and the theatre, there are only so many books and so many composers and playwrights.

B – Precisely.

A – Yes, while being able to cure diseases might appear to be a good thing at first, when you think about it, you realize that it would not be.

B – Indeed, and this is what we must always remind ourselves of when disease does strike and sorrow makes us lose our objectivity.

Now back to the present

The arguments presented by our two friends from the medieval era are fundamentally the same ones that a lot of people bring up when they try to rationalize and justify the diseases of old age, saying that the defeat of aging might, at first, appear to be a good thing, but would actually not be that good after all.

However, given the knowledge we have today, it is very easy to counter their arguments; in any event, not too many people would agree that the conversation above would have made a good case against vaccines and modern medicine, which have brought infectious diseases under strict control and save countless lives that would otherwise be lost on a daily basis.

Just like the arguments in the conversation above would not be a valid reason to give up on the medicine we are used to, they are not a reason to give up on the medicine of the future—the rejuvenation biotechnologies that may one day prevent and reverse age-related diseases. Claiming otherwise is nothing but a double standard.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Neurons

Telomerase Alleviates Alzheimer’s Symptoms not via Telomeres

Scientists publishing in Nature Aging have shown that telomerase reverse transcriptase slows neurodegeneration but not due to its telomere-building activity [1].

Chromosomes’ bodyguards

The word “telomerase” rings a huge bell for people who are familiar with geroscience. The primary function of this ribonucleoprotein complex (it consists of both protein and RNA) is to repair telomeres. Telomerase replenishes telomeres to some extent, adding new nucleotides in a process that is catalyzed by a subunit of telomerase called TERT (telomerase reverse transcriptase). When telomeres get too short, the cell stops dividing. Telomere length is associated with aging [2], but this story is not about telomeres.

TERT versus AD

Scientists have noticed that higher TERT levels in neurons are associated with better protection from Alzheimer’s disease (AD) [3]. TERT expression also declines in Alzheimer’s disease, but neurons do not divide, so this effect cannot be attributed to TERT rebuilding telomeres. This is interesting but not very surprising, since rather than performing one job in the cell, proteins usually have many others. TERT has long been known to have both “canonical” (telomere-building) and “non-canonical” activities.

The authors of this new paper studied the role of TERT in neurons using murine and human models of Alzheimer’s disease (AD). In accordance with previous studies, in genetically engineered AD-prone mice, TERT levels were significantly lower than in sex- and age-matched controls.

However, when the researchers introduced an artificial TERT-producing gene to maintain healthy levels of TERT in the brain even as the mice aged and developed AD, this slowed disease progression and accumulation of amyloid beta (Aß), the hallmark of Alzheimer’s. In conditional mutants – mice that had their artificial TERT gene switched on in the middle of AD progression – TERT activation also led to a striking decline in Aß accumulation in the hippocampus.

TERT induction had several other benefits: it alleviated AD-associated neuroinflammation, resulted in decreased expression of amyloid precursor protein (APP), increased neuronal health, and, finally, led to a significant improvement in cognitive function.

Since it is much harder to experiment on humans than on mice, the researchers made do with studying human neurons in vitro. They derived neurons from human induced pluripotent stem cells (iPSCs) and designed them to produce abnormal quantities of APP, thus creating a cellular model of AD. The researchers then introduced TERT-carrying viral vectors into the neurons, with results similar to what had been observed in murine neurons. Interestingly, TERT induction in human neurons not only decreased APP protein levels but also triggered the activation of the well-known anti-aging gene SIRT1 as well as of several genes related to synaptic plasticity and inflammation suppression.

Definitely not the telomeres

Though it was rather obvious that telomeres had no role here, the researchers spent some time establishing this as a fact. In some of the experiments, they used a catalytically inactive TERT mutant – that is, a protein that is very similar to TERT except that it does not facilitate telomere extension. In these experiments, mutant TERT exerted the same effects as normal TERT.

The scientists hypothesize that this non-catalytic neuroprotective activity by TERT might be the reason why neurons maintain a certain level of TERT expression despite being post-mitotic (not dividing anymore). The researchers also note that, according to previous studies, TERT reactivation improves function of other postmitotic cells such as cardiomyocytes and hepatocytes – apparently, without telomere replenishment being involved [4].

In the experiments, TERT had wide-ranging effects on gene networks related to AD and neuronal health. Since TERT is known to be able to influence gene expression, the researchers hypothesize that this is how it works in neurons as well, though the mechanism of action is not entirely clear.

Conclusion

This paper highlights a lesser-known side of TERT that does not involve telomeres. According to the authors, while TERT research has focused primarily on its canonical functions, “there is a growing appreciation that TERT also functions in postmitotic tissues via modulation of gene expression”. Studying the non-canonical activities of TERT and other proteins can broaden our understanding of molecular biology and might lead to breakthroughs in geroscience.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Literature

[1] Shim, H. S., Horner, J. W., Wu, C. J., Li, J., Lan, Z. D., Jiang, S., … & DePinho, R. A. (2021). Telomerase reverse transcriptase preserves neuron survival and cognition in Alzheimer’s disease models. Nature Aging, 1-13.

[2] Vaiserman, A., & Krasnienkov, D. (2021). Telomere length as a marker of biological age: state-of-the-art, open issues, and future perspectives. Frontiers in Genetics, 11, 1816.

[3] Spilsbury, A., Miwa, S., Attems, J., & Saretzki, G. (2015). The role of telomerase protein TERT in Alzheimer’s disease and in tau-related pathology in vitro. Journal of Neuroscience, 35(4), 1659-1674.

[4] Sahin, E., Colla, S., Liesa, M., Moslehi, J., Müller, F. L., Guo, M., … & DePinho, R. A. (2011). Telomere dysfunction induces metabolic and mitochondrial compromise. Nature, 470(7334), 359-365.

Journal Club January 2022 – CAR T cells produced in vivo to treat cardiac injury

Hosted by Dr. Oliver Medvedik, Journal Club returns on Tuesday 25th January at 12:00 Eastern and will be broadcast live on the lifespan.io Facebook page. The topic for this month is the paper ‘CAR T cells produced in vivo to treat cardiac injury‘ which looks at how researchers created CAR T cells to target scar tissue in the heart. Being able to remove fibrotic tissue from the heart could help the heart to heal properly following an injury.

Making CAR T cells in vivo

Cardiac fibrosis is the stiffening and scarring of heart tissue and can be fatal. Rurik et al. designed an immunotherapy strategy to generate transient chimeric antigen receptor (CAR) T cells that can recognize the fibrotic cells in the heart (see the Perspective by Gao and Chen). By injecting CD5-targeted lipid nanoparticles containing the messenger RNA (mRNA) instructions needed to reprogram T lymphocytes, the researchers were able to generate therapeutic CAR T cells entirely inside the body. Analysis of a mouse model of heart disease revealed that the approach was successful in reducing fibrosis and restoring cardiac function. The ability to produce CAR T cells in vivo using modified mRNA may have a number of therapeutic applications. —PNK

Lifespan Heroes can join us live on the call using the Zoom connection info below.

Join Zoom Meeting https://lifespan-io.zoom.us/j/84575150529?pwd=cEJLOGg0dG1hdWluUnY0bGNEdGlyZz09

Meeting ID: 845 7515 0529 Passcode: 099277

Literature

Rurik, J. G., Tombácz, I., Yadegari, A., Méndez Fernández, P. O., Shewale, S. V., Li, L., … & Epstein, J. A. (2022). CAR T cells produced in vivo to treat cardiac injury. Science375(6576), 91-96.

CAR T Cells Produced in Vivo to Treat Cardiac Injury

Hosted by Dr. Oliver Medvedik, Journal Club returns on Tuesday 25th January at 12:00 Eastern and will be broadcast live on the lifespan.io Facebook page. The topic for this month is the paper ‘CAR T cells produced in vivo to treat cardiac injury‘, which looks at how researchers created CAR T cells to target scar tissue in the heart. Being able to remove fibrotic tissue from the heart could help the heart to heal properly following an injury.

Making CAR T cells in vivo

Cardiac fibrosis is the stiffening and scarring of heart tissue and can be fatal. Rurik et al. designed an immunotherapy strategy to generate transient chimeric antigen receptor (CAR) T cells that can recognize the fibrotic cells in the heart (see the Perspective by Gao and Chen). By injecting CD5-targeted lipid nanoparticles containing the messenger RNA (mRNA) instructions needed to reprogram T lymphocytes, the researchers were able to generate therapeutic CAR T cells entirely inside the body. Analysis of a mouse model of heart disease revealed that the approach was successful in reducing fibrosis and restoring cardiac function. The ability to produce CAR T cells in vivo using modified mRNA may have a number of therapeutic applications. —PNK

Literature

Rurik, J. G., Tombácz, I., Yadegari, A., Méndez Fernández, P. O., Shewale, S. V., Li, L., … & Epstein, J. A. (2022). CAR T cells produced in vivo to treat cardiac injury. Science375(6576), 91-96.

ALEC is a lifespan comparison tool for researchers.

An Open Access Research Tool for Lifespan Comparisons

Dr. Leon Peshkin talks us through a new open access research tool he has helped to develop. The Animal Life Expectancy Comparisons Research Tool (ALEC) is free for researchers to use now.

If a drug increases lifespan in mice by 15%, should I take it?

The idea of intervention testing in a model organism is simple: while keeping all conditions equal, test whether animals subjected to an intervention show a statistically significant difference in lifespan compared to a control group. An intervention could be a particular drug, caloric restriction, a diet of different nutrients (e.g. more protein), a change in feeding regime, etc.

The aim of such experiments is not to directly search for an elixir of life but to use previously characterized molecules as exploratory tools in order to find out which biological processes control healthy lifespan.

The key aspect of these tests is treating and observing the studied animals for a substantial part, if not the entirety, of their respective lifespans. A single instance of a dog living to 30 years or a mouse living for 5 would, in itself, be sensational. When lifespan changes slightly, say an extra 15%, we need data on hundreds of animals. But 15% in comparison to what?

Controlling the controls

During my compulsory service in the Russian army, I briefly picked up the habit of smoking. Smokers were excused for frequent breaks, while the rest had to keep doing hazardous tasks, such as fixing sewage pipes, moving heavy equipment, and applying toxic paint. My peers got injuries and chronic respiratory illnesses.

In retrospect, a brief episode of chain smoking would appear to have had a substantial benefit within our “cohort”. Baselines matter! Reporting life extension in sick mutants, or animals kept in suboptimal conditions, has very different implications from a study involving a healthy control group.

Lifespan curveTake a close look at these so-called lifespan curves, each of which shows a surviving fraction of a cohort as a function of time, always going from 100% to zero. The precise shape of such a curve and slight differences between multiple curves tell us a lot about an intervention and its interaction with an organism.

This plot compares effects of several drugs from an Intervention Testing Program (ITP) in UM-HET3 mice [1]. It is meant to illustrate that the notion of “statistically significant” is not at all trivial. On one hand, rapamycin gave about 15% extra lifespan compared to controls. However, the same ITP data shows a 15% median lifespan difference between control male mice held at two different facilities in otherwise identical conditions.

Cross-checking the literature, we see that there are 20 papers on rapamycin in mice [3,4]. One shows a median lifespan increase of 8%, while another shows a 37% increase in the same strain/dose (128 ppm). Getting to the bottom of such differences would be crucial e.g. for Longevica, whose business is based on the outcome of another large intervention testing project: 1000+ compounds in B6C3F1/J mice over 3 years, tested in 15 mice per compound.

Longevica is looking to complement its own data with all the drugs ever tested in mice, creating an open research platform. In a separate effort, GeneAge and OpenGenes have been compiling data on all genetic interventions affecting lifespan.

Remarkable conservation of processes

A remarkable conservation across a wide range of species, from molecular- to organ-level processes, enables testing interventions in one species and generalizing the results to others. Such universality has indeed been observed: caloric restriction and rapamycin affect lifespans across species, from apes to flies. Alas, there are no perfect species – some are prohibitively expensive to use at scale, some live too long, and some only react to unreasonably high doses.

We have to do what we can; expensive animals are used scarcely, producing small (possibly not statistically significant) cohorts, while worms are subjected to extreme dosages when drugs crash out of solution. Our hope is that a big picture will come through when we combine reports of interventions in one species and closely related interventions in related species. Thousands of results of intervention testing for lifespan extension have been published to date [1-2].

When and where is such an integration supposed to occur? Agglomerating all the knowledge in the entirety of the relevant literature would be a superhuman feat. Perhaps artificial intelligence could help, but AI starts with computer-readable data, and current publishing practices are a long way from forcing scientists to express their premises and findings in a framework of constrained ontologies and logical predicates.

Someone has to marshal the sources and distill the literature into a uniform representation while working out a proper database schema. Early attempts [3-5] leave a lot to be desired. On top of the inherent discordance of the literature, the scope and quality of extracted information is very limited.

The same drug (caffeine), tested in the same strain of worms and at the same dose (7.5 mM), decreased lifespan by 12% in one study and increased it by 20% in another. It turns out that a drastically different temperature influences metabolism, but this was not reflected in the baseline data. Baselines matter!

A system focused on baseline data

All this underscores a need for a system that contains detailed baseline data on model organisms and control conditions in order to allow us to contrast the controls used in a given paper to others reporting on the same strain and to verify that the lifespan follows the same distribution.

Rich data on control groups’ lifespans will provide answers. What are the longest and shortest living strains of mice? How does temperature affect the lifespan of worms? Which husbandry conditions produce the longest lifespan in certain species?

To address this need for a data repository and an open research platform, Dr. Leon Peshkin conceived ALEC – Animal Life Expectancy Comparisons – a lifespan data browser whose application depends on the data it is populated with.

The most challenging and expensive part of the project will be data extraction and curation. A pilot site is already populated with a substantial seed dataset kindly provided by the ITP [1]; it is hosted by lifespan.io and available for interactive exploration, and there are multiple illustrations of what can be uncovered within ALEC.

This pilot effort, spearheaded by Leon Peshkin and Olga Spiridonova, is focused mainly on lifespan in controls across species and strains. Longevica and OpenGenes can now develop GitHub-style branches of the ALEC platform.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Literature

[1] ITP https://www.nia.nih.gov/research/dab/interventions-testing-program-itp

[2] ITP in worms https://citp.squarespace.com

[3] https://genomics.senescence.info/drugs

[4] Barardo, D., et al, de Magalhaes, J.P. (2017) “The DrugAge database of ageing-related drugs.” Aging Cell 16(3):594-597

[5] https://geroprotectors.org

Old man eye

Heat Shock Protein Fights Senescence in Macular Degeneration

Researchers publishing in Experimental Eye Research have discovered that the peptide aB-crystallin can reduce the cellular senescence that affects the progression of age-related macular degeneration (AMD).

What is αB-crystallin?

αB-crystallin is a well-known heat shock protein, a family of proteins that is used in temperature regulation. This protein has been previously demonstrated by this research team to have positive effects on retinal pigment epithelium (RPE) cells, including its benefits for mitochondria [1], its positive effects on oxidative stress [2], and its ability to prevent cellular death [3].

With this study, the researchers pinpointed another effect of this protein, one that is related to those three and many more: cellular senescence. In order to manage its levels, they used a chaperone peptide, a collection of amino acids that is generally smaller than a protein, called mini Cry.

Cellular senescence seems to be negated by mini Cry

For this study, the researchers induced senescence in RPE cells by giving them a precise dose of the antibiotic doxorubicin. As expected, the cells were shown to have a senescent phenotype, as measured by SA-β-gal, p16, and p21 accumulation, which are common biomarkers of cellular senescence. Co-administration of mini Cry decreased these levels nearly to those of a control group that was never administered doxorubicin at all.

These results were confirmed by using mini Cry on cells that were driven senescent by oxidative stress, which was induced in this study through hydrogen peroxide. The effects of mini Cry on peroxide-treated cells were nearly identical to its effects on doxorubicin-treated cells.

The researchers also returned to the mitochondria that they studied previously, noting that mitochondrial biogenesis, the process by which mitochondria are created, is actually increased in cellular senescence. However, this is reduced back to, or below, untreated control group levels with the administration of mini Cry.

The mitochondria’s ability to perform their basic function, provide energy from glucose and oxygen through glycolysis, is also affected; glycolysis increases with cellular senescence as well, and mini Cry reduced it, also to levels below that of the control group in some cases.

Finally, the researchers chose to examine one of the most well-known and dreaded aspects of cellular senescence: the SASP. The inflammatory mediators and interleukins that are associated with the SASP, including TNF-α, IL-6, and IL-8, were decreased to or below control group levels with mini Cry.

The researchers examined a mouse model to briefly examine the effects of senescence on RPE cells, where they found evidence for its association with AMD and subretinal fibrosis, but they did not test the effects of mini Cry on it.

Conclusion

These researchers’ continued efforts and examinations of the biology of RPE cells has yielded interesting findings that might possibly be useful for the treatment of AMD. If mini Cry can be dosed and tested in animals and human beings, it may provide an amelioration of this common and often blinding disease.

However, possibly the most interesting finding from a life extension viewpoint is that the researchers have been measuring many different positive effects of αB-crystallin of over the years, all of which seem to hinge upon a single upstream cause. There is no such thing as a complete panacea, but if more research can be directed into treatments that can possibly provide broad and positive effects against multiple aspects of aging, such treatments could potentially ameliorate multiple “different” conditions at once.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Literature

[1] Sreekumar, P. G., Wang, M., Spee, C., Sadda, S. R., & Kannan, R. (2020). Transporter-Mediated Mitochondrial GSH Depletion Leading to Mitochondrial Dysfunction and Rescue with aB Crystallin Peptide in RPE Cells. Antioxidants, 9(5), 411.

[2] Sreekumar, P. G., Li, Z., Wang, W., Spee, C., Hinton, D. R., Kannan, R., & MacKay, J. A. (2018). Intra-vitreal aB crystallin fused to elastin-like polypeptide provides neuroprotection in a mouse model of age-related macular degeneration. Journal of Controlled Release, 283, 94-104.

[3] Sreekumar, P. G., Chothe, P., Sharma, K. K., Baid, R., Kompella, U., Spee, C., … & Hinton, D. R. (2013). Antiapoptotic properties of a-crystallin–derived peptide chaperones and characterization of their uptake transporters in human RPE cells. Investigative ophthalmology & visual science, 54(4), 2787-2798.

Launch Button

Altos Labs’ $3 Billion Launch to Reverse Cellular Aging

In September 2021, we reported that Altos Labs was about to launch an ambitious project to develop partial cellular reprogramming to the point where it could be safely used in humans to reverse cellular aging. That launch has now officially started, and Altos Labs is shaping up to be a real contender in the battle against aging and age-related diseases.

Altos Labs has considerable backing behind it

Among the backers of Altos Labs are Russian-born billionaire Yuri Milner along with Jeff Bezos, who is the world’s richest person and the former CEO of Amazon who stepped down last July.

Altos Labs has also attracted significant scientific talent. Shinya Yamanaka, one of the men who started it all, is in the scientific leadership. Juan Carlos Izpisua Belmonte, the first researcher to demonstrate that Yamanaka factors could be used in living animals to make them younger again, is also on the team.

Nobel Prize winner Jennifer Doudna, one of the researchers involved in the discovery of the gene editing tool CRISPR-Cas9, is on the board. We also recently learned that Morgan Levine has also joined the Altos team and brings her expertise of epigenetic clocks with her.

Cellular aging can be reversed

Sounds interesting, but what is Altos Labs doing, and what is its approach to targeting aging?

In a nutshell, as we age, our cells change their gene expression patterns and move from a profile that is pro-youth to one that is pro-aging. This change was always assumed to be a one-way-street until 2006, when Drs. Takahashi and Yamanaka showed that it was possible to reprogram mouse cells using just four transcription factors: Oct4, Sox2, Klf4, and c-Myc (OSKM). These genes became known as the Yamanaka factors.

It was discovered that these Yamanaka factors could reprogram adult cells back to an embryonic state called pluripotency, a flexible state in which the cell behaves like an embryonic stem cell and can become any other cell type in the body.

It was also shown that reprogramming these cells back to pluripotency caused them to behave like young cells again. Telomere length, mitochondrial function, and oxidative stress levels were reset to those of younger cells.

The problem was that exposing cells to the Yamanaka factors totally reset the cell type, which is a problem if a heart cell forgets it’s a heart cell while part of the organ! Thankfully, it was soon discovered that exposing cells to the Yamanaka factors for just long enough was enough to reset their cellular age without making them forget what type of cells they were. This was the birth of partial cellular reprogramming.

Now the race is on to bring partial cellular reprogramming to people, but the big question is: can it be made safe for human use? Altos is gearing up to find out and has the funds and the people to do it.

Official launch press release

SAN FRANCISCO, Jan. 19, 2022 /PRNewswire/ — Altos Labs™ (Altos™) launched today as a new biotechnology company dedicated to unraveling the deep biology of cellular rejuvenation programming. Altos’ mission is to restore cell health and resilience to reverse disease, injury, and the disabilities that can occur throughout life. The company launches with a community of leading scientists, clinicians, and leaders from both academia and industry working together towards this common mission.

Altos Labs

The Altos executive team will be composed of Hal Barron, MD (incoming CEO), Rick Klausner, MD (Chief Scientist and Founder), Hans Bishop (President and Founder), and Ann Lee-Karlon, PhD (Chief Operating Officer). Hal Barron is currently President of R&D and Chief Scientific Officer at GSK and will join Altos as CEO and Board co-chair effective August 1, 2022. Klausner was former director of the National Cancer Institute and entrepreneur, Bishop was former CEO of GRAIL and Juno Therapeutics, and Lee-Karlon was former Senior Vice President at Genentech.

Altos will be initially based in the US in the San Francisco Bay Area and San Diego, and in the UK in Cambridge. The company will also have significant collaborations in Japan. Set within these geographies, activity will be organized across the Institutes of Science and the Institute of Medicine. The Altos Institutes of Science will pursue deep scientific questions and integrate their findings into one collaborative research effort. The Altos Institute of Medicine will capture knowledge generated about cell health and programming to develop transformative medicines.

The three Altos Institutes of Science will be led by Juan Carlos Izpisua Belmonte, PhD, Wolf Reik, MD, and Peter Walter, PhD. Thore Graepel, PhD, will serve as global head of computational science, artificial intelligence, and machine learning. Prior to joining Altos, Izpisua Belmonte was professor and chair at the Salk Institute, Reik was director of the Babraham Institute and is an honorary professor at the University of Cambridge, and Walter was professor at the University of California, San Francisco (UCSF) and investigator at the Howard Hughes Medical Institute. Graepel previously served as research lead at Google DeepMind and professor at University College London. Within the Institutes of Science, an extraordinary group of Principal Investigators (PIs) will collaboratively pursue the many aspects of cell health and programming.

The Altos Board of Directors and advisors include Nobel Laureates and scientific leaders. The Board will be co-chaired by Rick Klausner, Hans Bishop, and Hal Barron (current director and incoming co-chair) and includes the following Board directors: Frances Arnold, PhD (Linus Pauling Professor of Chemical Engineering, Bioengineering and Biochemistry at the California Institute of Technology and Nobel Laureate), Hal Barron, MD (Chief Scientific Officer and President, R&D, of GSK), Jennifer Doudna (Li Ka Shing Chancellor’s Chair and Professor of Chemistry and Molecular and Cell Biology at the University of California, Berkeley, President of the Innovative Genomics Institute, and Nobel Laureate), Maria Leptin, PhD (President of the European Research Council), Robert Nelsen (Co-founder and Managing Director of ARCH Venture Partners), Rajiv Shah, MD (President of the Rockefeller Foundation), and David Baltimore, PhD (President Emeritus and Judge Shirley Hufstedler Professor of Biology at the California Institute of Technology and Nobel Laureate), as lead independent director. Shinya Yamanaka, MD, PhD (Director of the Center for iPS Cell Research and Application at Kyoto University and Nobel Laureate), will serve as senior scientific advisor to Altos without remuneration, overseeing research activities in Japan.

“I am deeply honored to have been offered this once in a lifetime opportunity to lead such a unique company with a transformative mission to reverse disease,” said Hal Barron. “It’s clear from work by Shinya Yamanaka, and many others since his initial discoveries, that cells have the ability to rejuvenate, resetting their epigenetic clocks and erasing damage from a myriad of stressors. These insights, combined with major advances in a number of transformative technologies, inspired Altos to reimagine medical treatments where reversing disease for patients of any age is possible.”

Altos is designed to integrate the best features of academia and industry — from academia the freedom to pursue the most challenging problems in biology, and from industry the focus on a shared mission, ability to foster deep collaborations, and the passion and commitment to transform science into medicines.

“Altos seeks to decipher the pathways of cellular rejuvenation programming to create a completely new approach to medicine, one based on the emerging concepts of cellular health,” said Rick Klausner. “Remarkable work over the last few years beginning to quantify cellular health and the mechanisms behind that, coupled with the ability to effectively and safely reprogram cells and tissues via rejuvenation pathways, opens this new vista into the medicine of the future. Altos begins with many of the leading scientists who are creating this new science. Together, we are building a company where many of the world’s best scientists can collaborate internally and externally and develop their research with the speed, mission, and focus of private enterprise. Our success will depend upon a culture of intense collaboration, enthusiasm, and openness.”

Will this be another Calico?

Some people in our community may think that Altos could turn out to be another Google Calico, with lots of hype and little to show in real terms years later. This could, of course, be true, but it is at least equally likely that this could also be an important step forward for our field. Altos has the backing, it has the people, and it has chosen an approach that has huge potential in the context of changing how we age.

We cannot, of course, predict the future, and a lot of this depends on the successful and safe translation of partial cellular reprogramming to people. There is no doubt that something that is so potentially transformative, and could have such a significant impact on aging, is going to need years of testing and refinement.

While enthusiasm for partial cellular reprogramming is currently high, make no mistake: this is something for the long haul. It is our view that we are a good decade or perhaps more away from partial cellular reprogramming reaching people. This is due to the complexity of the biology involved, the clinical trial process, and the inevitable setbacks on the road to getting it to work safely.

We wish Altos the best of luck, and we will be following this company’s progress in the coming years. Meanwhile, while we wait for this and other technologies to arrive, we should all strive to stay as healthy and active as possible.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.
Hearing Loss

Epigenetic Age Acceleration Is Linked to Hearing Loss

A study published in Frontiers in Aging Neuroscience examined the relationship between epigenetic age acceleration and hearing [1].

Since 1958, a team of researchers from the National Institute on Aging Intramural Research program has been conducting the Baltimore Longitudinal Study of Aging (BLSA). The BLSA study continuously enrolls volunteers free of chronic conditions from a variety of age groups and conducts visits every 1 to 4 years, depending on age. Participants younger than 60 were seen every 4 years, participants between 60 and 79 were seen every 2 years, and participants who were at least 80 were seen every year.

Major revisions were made in 2003 to the BLSA study to add phenotypic measurements and molecular biomarkers. Due to the longitudinal nature of the study, changes in technology have occurred during the study effort, and extensive efforts have been made over time to control for these changes in analysis according to Dr. Luigi Ferruci and colleagues [2].

Epigenetic aging and hearing loss in a longitudinal study

236 individuals from the BLSA study were enrolled in this secondary analysis study. DNA was extracted from blood samples and CpG methylation status was determined from 485,577 CpG sites. Hearing was tested by trained technicians in a soundproof booth with an audiometer device.

Epigenetic age acceleration was measured with the GrimAge [3], Intrinsic Epigenetic Age Acceleration (IEAA) Horvath [4], Hannum [5], Phenoage [6], and Dunedin Pace of Aging (DunedinPACE) [7] clocks.

GrimAge and DunedinPACE had the strongest association with hearing

After adjusting for age, sex, race, and time, hearing was statistically associated with the GrimAge and DunedinPACE clocks. Both the direction and magnitude of the associations continued to be consistent after adjustment for congestive heart failure, hypertension, peripheral arterial disease, and smoking history.

An additional subanalysis was done on 197 participants, as some of the epigenetic clocks were limited to people who were at least 60 years old. In this older subset of participants, similar to the prior result, the GrimAge clock and the DunedinPACE clock were statistically associated with hearing. The researchers then ran an additional analysis to adjust for the variable of smoking cigarettes history. Like the prior two results, the GrimAge clock and the DunedinPACE clock were statistically associated with hearing. When the variable changed from the better hearing ear to the worse hearing ear, the results remained consistent.

Conclusion

This study was the first to examine the relationship between hearing loss via audiometric measurement and epigenetic clocks. The authors note some possible confounding factors and potential inaccuracies in the study, make it clear that future studies are needed, and finish as follows:

In conclusion, our findings demonstrate that not all epigenetic clocks were strongly correlated with hearing. Only those epigenetic clocks established using many cardiovascular measurements with longitudinal information were associated with hearing. Future research is needed to study the potential subclinical cardiovascular causes of hearing and to investigate the relationship between DNA methylation and hearing longitudinally.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Literature

[1] Kuo, P. L., Moore, A. Z., Lin, F. R., & Ferrucci, L. (2021). Epigenetic Age Acceleration and Hearing: Observations From the Baltimore Longitudinal Study of Aging. Frontiers in aging neuroscience, 13, 790926. https://doi.org/10.3389/fnagi.2021.790926

[2] Kuo, P. L., Schrack, J. A., Shardell, M. D., Levine, M., Moore, A. Z., An, Y., Elango, P., Karikkineth, A., Tanaka, T., de Cabo, R., Zukley, L. M., AlGhatrif, M., Chia, C. W., Simonsick, E. M., Egan, J. M., Resnick, S. M., & Ferrucci, L. (2020). A roadmap to build a phenotypic metric of ageing: insights from the Baltimore Longitudinal Study of Aging. Journal of internal medicine, 287(4), 373–394. https://doi.org/10.1111/joim.13024

[3] Lu, A. T., Quach, A., Wilson, J. G., Reiner, A. P., Aviv, A., Raj, K., Hou, L., Baccarelli, A. A., Li, Y., Stewart, J. D., Whitsel, E. A., Assimes, T. L., Ferrucci, L., & Horvath, S. (2019). DNA methylation GrimAge strongly predicts lifespan and healthspan. Aging, 11(2), 303–327. https://doi.org/10.18632/aging.101684

[4] Horvath S. (2013). DNA methylation age of human tissues and cell types. Genome biology, 14(10), R115. https://doi.org/10.1186/gb-2013-14-10-r115

[5] Hannum, G., Guinney, J., Zhao, L., Zhang, L., Hughes, G., Sadda, S., Klotzle, B., Bibikova, M., Fan, J. B., Gao, Y., Deconde, R., Chen, M., Rajapakse, I., Friend, S., Ideker, T., & Zhang, K. (2013). Genome-wide methylation profiles reveal quantitative views of human aging rates. Molecular cell, 49(2), 359–367. https://doi.org/10.1016/j.molcel.2012.10.016

[6] Levine, M. E., Lu, A. T., Quach, A., Chen, B. H., Assimes, T. L., Bandinelli, S., Hou, L., Baccarelli, A. A., Stewart, J. D., Li, Y., Whitsel, E. A., Wilson, J. G., Reiner, A. P., Aviv, A., Lohman, K., Liu, Y., Ferrucci, L., & Horvath, S. (2018). An epigenetic biomarker of aging for lifespan and healthspan. Aging, 10(4), 573–591. https://doi.org/10.18632/aging.101414

[7] Belsky, D. W., Caspi, A., Arseneault, L., Baccarelli, A., Corcoran, D. L., Gao, X., Hannon, E., Harrington, H. L., Rasmussen, L. J., Houts, R., Huffman, K., Kraus, W. E., Kwon, D., Mill, J., Pieper, C. F., Prinz, J. A., Poulton, R., Schwartz, J., Sugden, K., Vokonas, P., … Moffitt, T. E. (2020). Quantification of the pace of biological aging in humans through a blood test, the DunedinPoAm DNA methylation algorithm. eLife, 9, e54870. https://doi.org/10.7554/eLife.54870

Rat bones

Quercetin Improves Bone Regeneration in Older Rats

A new study in ACS Applied Materials and Interfaces used a combined geroscience and tissue engineering approach to regenerate bone in aged rats [1].

Replacement or rejuvenation?

Too often, tissue engineering and longevity therapeutics are viewed as competing strategies – two different paths to potentially combat aging. In tissue engineering, cells and biomaterials are used to form tissue that replaces aged or diseased tissues. Meanwhile, longevity therapeutics include drugs that target one or more aging pathways in order to rejuvenate existing aged or diseased tissue. When viewed in competition, the question becomes “Which strategy deserves our precious time, attention, and funding?”

In reality, these two fields are quite complementary. Current tissue engineering strategies rely heavily on the body’s innate ability to heal and self-regenerate – which declines considerably with age. Additionally, while evidence is mounting that various drugs can modulate aging, at least in animal models, their effects have been far from total reversal of disease. Eventually, tissue damage becomes too extensive to ever return to a healthy state. If drugs can improve the aged body’s regenerative potential, it would follow that tissue engineering approaches would be more successful in older adults if used in combination with those treatments.

While the two fields have been relatively separate, progressing at their own rates in parallel, the first studies that utilize both approaches are now beginning to be conducted. Most recently, scientists at Sichuan University have used the senolytic quercetin and a TG-18 hydrogel to regenerate a bone defect in aged rats [1].

Finding the best senolytic

Many senolytic drugs have shown cell type-specific effects. To focus their study on bone regeneration, the researchers used bone marrow-derived mesenchymal stem cells (BMSCs) from rats. Cellular senescence was induced in these cells in vitro by either hydrogen peroxide or d-galactose treatment. Both senescent and non-senescent cells were treated with 10 different known senolytics (dasatinib, quercetin, navitoclax, A-1331852, A-1155463, ABT-737, fisetin, geldanamycin, 17-AAG, and 17-DMAG) at a concentration of 10 µmol.

Each drug except navitoclax significantly reduced the ratio of senescent BMSCs (as measured by SA-ß-gal staining) after hydrogen peroxide or d-galactose treatment. Dasatinib, quercetin, geldanamycin, 17-AAG, and 17-DMAG notably reduced this ratio to a greater extent than the other drugs. However, only fisetin and quercetin showed no toxicity to non-senescent cells, with dasatinib, geldanamycin, 17-AAG, and 17-DMAG especially showing notable toxicity. Because of these results, the researchers chose to move forward with quercetin for the remainder of their experiments.

Quercetin was then optimized for concentration. In these dose optimization studies, the researchers investigated the induction of senescence and effectiveness of quercetin in their BMSCs beyond just SA-ß-gal, confirming their results with the DNA damage marker γH2AX, the SASP markers IL-1ß and IL-6, and the cell cycle regulators p16, p21, and p53. A 20 µmol concentration showed the greatest effectiveness at reducing senescence without toxicity.

At this concentration, quercetin treatment also improved the proliferation and osteogenic differentiation of the rat BMSCs exposed to hydrogen peroxide but not of non-senescent control cells. This suggested that eliminating senescent cells may be able to improve bone regeneration.

A drug release platform that responds to senescent cells

In order to deliver the drug directly to the site of injury and to release it more rapidly in the presence of senescent cells, a triglycerol monostearate (TG-18) hydrogel was utilized for this study.

Senescent cells are known to release matrix metalloproteinases (MMPs) as part of their SASP. In this study, elevated levels of MMPs were observed in the in vitro senescent BMSCs and in the bone tissue of aged rats in vivo. TG-18 is a hydrogel that can encapsulate drugs like quercetin and is disassembled by MMP enzymes. Therefore, the researchers hypothesized the quercetin would be released more rapidly in the presence of senescent cells.

A maximum loading concentration of quercetin was determined to be approximately 3% by weight. When the TG-18 hydrogel was immersed in cell culture media conditioned by senescent cells, quercetin was released more rapidly compared to media from control cells. Additionally, TG-18 degraded more rapidly in the skull defects created in old rats compared to young rats.

Bone regeneration was greater with the combination treatment

To investigate its ability to facilitate bone regeneration, TG-18 loaded with 0.2% quercetin, 2% quercetin, or no quercetin was implanted into aged rats. The hydrogel was also supplemented with 2% hydroxyapatite in all groups to further facilitate bone regeneration.

Bone defects were surgically created in either the femur or skull and filled with the TG-18 hydrogel. At 3 months, for both femur and skull defects, senescence was decreased with quercetin treatment as measured by p16, γH2AX, and MMP expression. Bone formation was also greater with quercetin treatment as measured by microCT, Masson trichrome staining, and OCN and OPN expression. For each of these measures, the 2% quercetin showed slightly better, although not statistically significant, results relative to the 0.2% group.

In this study, we screened out quercetin as the suitable senolytic drug for clearing senescent rBMSCs. According to the secretion of MMPs in senescent rBMSCs, a senescence-responsive hydrogel loading quercetin was prepared to eliminate the senescent rBMSCs in the bone defects (Scheme 1). In vivo, bone repair assay confirmed that the senescence-responsive hydrogel efficiently eliminated local senescent cells and promoted the repair of bone defects in aged rats. This work presents a promising strategy for local removal of the senescent rBMSCs to promote bone regeneration in aged individuals.

Conclusion

Many previous studies have shown similar success at regenerating bone in rats. However, these studies have almost always been conducted in younger rats, which regenerate quite well on their own. Future studies would do well to follow in the footsteps of this one, as these treatments will ultimately be used primarily in older adults.

We know that senescence is critical for wound healing, but in older organisms, the senescent response is typically prolonged and interferes with the healing process [2,3]. This study provides compelling evidence that senolytics can, in fact, be beneficial for bone regeneration in older organisms. With TG-18, the local delivery and controlled release of quercetin initiated by the presence of senescent cells is also an exciting strategy moving forward.

Notably, however, the defects treated in this study were very small. Larger defects are more difficult to heal, as fibrotic scar tissue infiltrates the area more quickly than bone can form. Whether this strategy would be successful in humans or in larger defects cannot be claimed from these results. Although, there are also many improvements to this strategy, such as the inclusion of other biomaterials, cells, and/or growth factors, that future studies could use when targeting the regeneration of larger bone defects.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Literature

[1] Xing, X. et al. Local elimination of senescent cells promotes bone defect repair during aging. ACS Appl Mater Interfaces (2022). https://doi.org/10.1021/acsami.1c22138

[2] Demaria, M. et al. An essential role for senescent cells in optimal wound healing through secretion of PDGF-AA. Developmental Cell (2014). https://doi.org/10.1016/j.devcel.2014.11.012

[3] da Silva, P.F.L. et al. The bystander effect contributes to the accumulation of senescent cells in vivo. Aging Cell (2019). https://doi.org/10.1111/acel.12848

Small food amount

Fasting-Mimicking Diet Helps Fight Cancer

In the first human trial of its kind, scientists showed that a fasting-mimicking diet can work synergistically with conventional therapies in cancer patients, altering their metabolisms and reshaping their immune systems [1].

What happens when you fast?

Fasting is shaping up to be a powerful addition to clinical practice. It is not a panacea that can fend off virtually every disease, but it can exert a profound effect on the human body. By altering metabolic pathways, periodic fasting can help maintain normal weight, reduce inflammation, lower blood pressure, and beneficially alter the gut microbiome [2]. But what about cancer?

Preclinical studies in mice suggest that fasting and fasting-mimicking diets (FMD) can work synergistically with anti-cancer treatments, enhancing their activity [3]. FMD is usually defined as “low calories, low carbohydrates, low protein”. Fasting and FMD reduce glucose, insulin, and insulin-like growth factor 1 (IGF1) levels, thus inhibiting the anabolic processes (biosynthesis) that help cancer cells grow. Fasting and FMD also alleviate, to a certain extent, the damage incurred by chemotherapy.

Fasting and FMD have also been shown to alter the immune system – in particular, by boosting tumor infiltration by CD8+ T cells (the effectors of antitumor immune responses) and reducing the number of immunosuppressive regulatory T cells.

Metabolic changes

This new paper describes the first human clinical trial that investigated the safety and feasibility, as well as the metabolic and immunomodulatory effects, of FMD.

The study group consisted of 101 cancer patients receiving various oncological therapies. The patients underwent several cycles of five-day restrictive FMD followed by 16 to 23 days of refeeding, depending on each patient’s anti-cancer regimen. Cancer stages and types also varied from patient to patient, and they included breast cancer, colorectal cancer, and lung cancer.

In accordance with previous research, the FMD reduced median plasma glucose levels by 18.6%, serum insulin by 50.7%, and serum IGF1 by 30.3%. These metabolic changes were correlated neither with tumor type and stage nor anti-cancer treatment. The researchers used two control groups: 9 healthy volunteers who underwent the same FMD regimen and 13 patients with advanced breast cancer on standard chemotherapy who were not subjected to FMD. Predictably, the first group experienced metabolic changes similar to the study group, while the second group did not.

Those metabolic changes appeared with every cycle of FMD, which means that systemic metabolic adaptation to the FMD did not occur. Each cycle also reduced patients’ BMI by around 4.5%, regardless of the type of concomitant treatment. Patients who were able to endure at least three FMD cycles began to fully regain weight between the cycles, which is another sign of the tolerability of FMD in cancer patients. In general, the authors report that adverse effects from the FMD were acceptably rare.

Reshaping the immune landscape

In some of the participants, the effect of FMD on the immune system was analyzed. The researchers learned that FMD reshapes the immune system in a way that promotes its anti-tumor activity. Monocytes are blood cells that are part of the innate immune system. Various monocyte subtypes have diametrically different effects on cancer, and FMD was able to reduce the abundance of two particularly nasty pro-cancer subtypes. In addition to that, FMD increased, both systemically and on the tumor level, the amount of cancer-fighting cells, such as CD8+ T cells and natural killer cells. According to the researchers, this resulted in “an enrichment of immune signatures previously associated with good prognosis and/or better response to therapies in patients with cancer… and with the activation of several antitumor immune programs.”

The researchers note that some of these immunologic modifications appear to be long-lasting – they were still detectable at least 40 days after the end of the last cycle of FMD. They hypothesize that in some clinical contexts, such as with less advanced tumors, several FMD cycles could be enough to induce a long-term reshaping of systemic immunity such that no new cycles are needed.

Conclusion

Of course, dietary interventions alone cannot beat cancer. Still, this new study proves that fasting and fasting-mimicking diets wield serious power that can work synergistically with conventional anti-cancer therapies. Several other trials of cyclic FMD in combination with anti-cancer therapies are underway (two of them include metformin), and we will continue to bring you the news.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Literature

[1] Vernieri, C., Fuca, G., Ligorio, F., Huber, V., Vingiani, A., Iannelli, F., … & de Braud, F. (2022). Fasting-Mimicking Diet Is Safe and Reshapes Metabolism and Antitumor Immunity in Patients with Cancer. Cancer Discovery, 12(1), 90-107.

[2] Maifeld, A., Bartolomaeus, H., Löber, U., Avery, E. G., Steckhan, N., Markó, L., … & Forslund, S. K. (2021). Fasting alters the gut microbiome reducing blood pressure and body weight in metabolic syndrome patients. Nature communications, 12(1), 1-20.

[3] Lee, C., Raffaghello, L., Brandhorst, S., Safdie, F. M., Bianchi, G., Martin-Montalvo, A., … & Longo, V. D. (2012). Fasting cycles retard growth of tumors and sensitize a range of cancer cell types to chemotherapy. Science translational medicine, 4(124), 124ra27-124ra27.

Running mouse

OKN-007 Protects Mouse Spinal Cords

Publishing in GeroScience, a team of Oklahoma City researchers has found that a nitrone compound with a low molecular weight, OKN-007, maintains motor neuron functionality in the spinal cords of aging mice.

Prior research

OKN-007 is not new in the literature. This is a nitrone compound, which refers to a specific functional group in organic chemistry, and it was originally developed to trap free radicals and combat oxidative stress. While it is known to readily cross the blood-brain barrier, a previous study has shown that it might actually decrease the permeability of this barrier, providing neuroprotective effects [1]. Multiple studies in rats have shown that it is protective against trauma [2-4], and it reduces abnormalities in a mouse model of Alzheimer’s disease [5].

This compound is not even new in drug development: the researchers cite previous human clinical trials, NCT03649464, NCT03587038, and NCT01672463, which focus on its use as a treatment for glioblastoma [6], a cancer of the nervous system, and related cancers. The researchers highlight an established safety profile for OKC-007 and its lack of adverse effects.

Motor neurons, aging, and OKC-007

Aging has been reported for decades to correspond to a significant loss of motor neurons in the spinal cord in humans [7], and many of the researchers involved in this study had previously reported in 2020 that this loss occurs in mice [8]. This study follows from that one, as the researchers sought a compound that could ameliorate this loss.

The naturally aged mice were fed freely (ad libitum) and given 150 milligrams of OKC-007 per 1 kilogram of drinking water from 16 months of age, then sacrificed and examined at the age of 25 months and compared to a control group of similarly aged mice.

The results were clear. Motor neuron counts in the treated mice were substantially and significantly greater than the same-aged control group. In fact, the motor neuron numbers in the treated mice were nearly identical to those of the young mice in the researchers’ 2020 study. The blood-spinal cord barrier (BSCB), which is similar to the blood-brain barrier, was better preserved, and BSCB permeability in treated old mice was, again, similar to that of the young mice in the previous study.

The microglia were also affected. Microglial proliferation, which increases with age, was reduced in the treatment group; microglial activation, on the other hand, was much higher in many of the treated mice. Astrocytes were apparently unaffected, with no significant changes between treatment and control groups.

Transcriptomic effects

The researchers analyzed the gene expression changes found to occur with OKC-007 treatment and compared them to the transcriptomic changes associated with aging. Of the 117 genes affected by OKC-007, 34 genes were also found to be affected by aging.

While some of the genes involved in this analysis are poorly defined, and five of the genes that were affected by OKC-007 treatment were also affected in the same way as aging, the researchers found that many of the other 29 genes, which were shown to be positively affected by this treatment, were involved in important parts of the neuromuscular system. Genes associated with neurotransmission, locomotion, neuronal development, and morphology were shown to be reverted back to a youthful state by the administration of OKC-007.

Conclusion

The researchers note that at least one mouse failed to respond to OKC-007 treatment, and they suggest that the same may also occur in human beings. This study did not identify the reasons behind this lack of a response, and the researchers also admit that the mechanism of action of OKC-007 has not yet been fully elucidated.

However, there are many reasons to be hopeful for OKC-007 as a treatment. The researchers offer the possibility of even higher doses and suggest that this compound should also have similar effects on the brain, ameliorating inflammation and potentially protecting against the demyelination of neurons. While further studies, including human studies, are required, it seems very possible that OKC-007 may be a safe compound with a significant and protective clinical benefit.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Literature

[1] Culot, M., Mysiorek, C., Renftel, M., Roussel, B. D., Hommet, Y., Vivien, D., … & Lundquist, S. (2009). Cerebrovascular protection as a possible mechanism for the protective effects of NXY-059 in preclinical models: an in vitro study. Brain research, 1294, 144-152.

[2] Clausen, F., Marklund, N., Lewén, A., & Hillered, L. (2008). The nitrone free radical scavenger NXY-059 is neuroprotective when administered after traumatic brain injury in the rat. Journal of Neurotrauma, 25(12), 1449-1457. [NXY-059 is the former name of OKN-007]

[3] Du, X., West, M. B., Cheng, W., Ewert, D. L., Li, W., Saunders, D., … & Kopke, R. D. (2016). Ameliorative effects of antioxidants on the hippocampal accumulation of pathologic tau in a rat model of blast-induced traumatic brain injury. Oxidative medicine and cellular longevity, 2016.

[4] Ewert, D. L., Lu, J., Li, W., Du, X., Floyd, R., & Kopke, R. (2012). Antioxidant treatment reduces blast-induced cochlear damage and hearing loss. Hearing research, 285(1-2), 29-39.

[5] Garcia-Alloza, M., Borrelli, L. A., Hyman, B. T., & Bacskai, B. J. (2010). Antioxidants have a rapid and long-lasting effect on neuritic abnormalities in APP: PS1 mice. Neurobiology of aging, 31(12), 2058-2068.

[6] Coutinho de Souza, P., Mallory, S., Smith, N., Saunders, D., Li, X. N., McNall-Knapp, R. Y., … & Towner, R. A. (2015). Inhibition of pediatric glioblastoma tumor growth by the anti-cancer agent OKN-007 in orthotopic mouse xenografts. PLoS One, 10(8), e0134276.

[7] Terao, S. I., Sobue, G., Hashizume, Y., Li, M., Inagaki, T., & Mitsuma, T. (1996). Age-related changes in human spinal ventral horn cells with special reference to the loss of small neurons in the intermediate zone: a quantitative analysis. Acta neuropathologica, 92(2), 109-114.

[8] Piekarz, K. M., Bhaskaran, S., Sataranatarajan, K., Street, K., Premkumar, P., Saunders, D., … & Van Remmen, H. (2020). Molecular changes associated with spinal cord aging. Geroscience, 42(2), 765-784.

Brian Kennedy

Dr. Brian Kennedy: From Sickcare to Healthcare

Dr. Brian Kennedy is a longevity heavyweight: a former President of the Buck Institute, currently a Distinguished Professor in the Department of Biochemistry and Physiology at the National University of Singapore, a co-editor of Aging Cell, and one of the researchers behind a recent study of alpha-ketoglutarate that resulted in winding back chronological age in humans by 7 years on average (with some caveats, as usual). We tapped into Brian’s scientific wisdom on topics ranging from Singaporeans’ remarkable longevity to the reproducibility crisis in biology research.

You live and work in Singapore now, which brings me to my first question: Singapore ranks very high in terms of life expectancy, as well as Japan and Hong Kong. What’s their secret?

First, there’s a healthier diet in Asia than in the West. They eat much less red meat, dairy, calories overall, and they try to get fresh food every day. There are other factors as well. One is that people here still exercise or keep active as part of their daily lives. Particularly in Japan, maybe more so than in Singapore, you will see little older ladies walking to the grocery store and carrying back some groceries every day. People are just more active than they are in the West, particularly after retirement. I, on the other hand, tell people that I have to go for a run every day because I don’t walk anywhere.

So, sustainable routine exercise as part of a daily life, and then there’s also good management of aging. The healthcare systems here are generally better than in the US, for sure, and in many other parts of the world. They take better care of people as they get older, and they catch diseases earlier. Singapore, Japan, Hong Kong have great healthcare systems. So, it’s mostly environmental and societal factors, not particularly genetics.

From what you’re saying, the West and the US in particular have a lot to learn?

Yes. We eat too much, we don’t exercise enough, and we also have a very inconsistent healthcare system.

What do you mean by inconsistent?

The motivation to do healthcare in the US is somewhat perverted. I’m a free market type of person, not a socialist, but there’s just too much emphasis on profit. The way we’ve done things with the insurance industry… a lot of people still don’t have insurance or are under-insured, and the cost of healthcare is so exorbitant that they can’t afford to get healthcare.

As a result, they don’t get primary care. They avoid all the things that aren’t essential, and then they get really sick. At that point, they have stage four cancer or something, and then a lot of money is spent trying to treat their cancer, but we’re starting too late. Also, the medical system is really targeted toward what I call “sickcare”.

Even for people that have means, the system typically doesn’t focus on prevention, and then people get some chronic disease of aging or an infectious disease. Again, a lot of resources are spent after they become sick. We need to refocus our healthcare approach on how do we keep people healthy longer? Of course, people still need to be treated when they get sick, but if we can extend healthspan, it’s a huge economic benefit and a huge benefit to our quality of life as well. I’d rather stay healthy than sick.

I like the term “sickcare” that you use in your talks. Do you think the American system is so focused on sickcare because of bad incentives?

Yes. People get paid for procedures and reimbursements. They don’t necessarily get paid to keep people healthy. I think that’s a big factor. To be fair, all healthcare systems have their problems. None of them are perfect. Singapore, though, has a public health care system. Everybody gets a certain base level of care that’s provided by the government, and then if you want to get a higher level of care, often that doesn’t mean better medical care, it just means private rooms, etc. If you want, you can get it, but everyone has a certain baseline that’s effective. The last time I looked, healthcare expenditure in Singapore was about 8% of the GDP, whereas the US, it’s almost 20% of the GDP and it’s not as effective.

I think, if you go entirely to public health care, that could create problems too, but if you have some balance where a certain level of care is provided for everybody and then there are opportunities for other people to get more if they want to, that’s probably a more efficient system.

I don’t think any healthcare system focuses enough on thinking about a person over the entirety of their life course. We think about people when they’re born, when they’re at a very young age and then we ignore them mostly until they get to 55 or 60 and start getting sick. That time in the middle is where we really should be focusing on prevention.

Aging, of course, is the biggest risk factor for practically everything, including mortality due to COVID-19. We should be taking a life course approach to health, trying to measure how people are aging, what’s happening to them throughout their life and developing interventions that are designed to keep them healthy before they get sick.

Let’s dig a bit deeper into the science of aging. I really liked your idea of the interconnectedness of the hallmarks and pillars of aging. Could you elaborate on this for our readers?

As you know, there are nine hallmarks of aging, according to the Lopez paper. In the paper that I wrote with a bunch of other people, there were seven pillars of aging, and they overlap somewhat.

What made me think about this interconnectedness was that every time we look at an intervention, whether it’s rapamycin, alpha-ketoglutarate, NAD precursors, metformin, or pick your favorite intervention, it doesn’t seem to be hitting just one pillar or hallmark but all of them.

This means there must be a lot of connectivity between these pillars and hallmarks. If you can hit a node in the system that integrates all of them together, then the signaling changes that you get both cell-autonomously and cell-non-autonomously affect all the pillars of aging and all the hallmarks. That’s why you get one drug that can impact aging. We’ve always thought aging was an extremely complex process. When I started in the field, everybody was saying, oh, you’re not going to find single gene mutations or single drugs that affect aging or lifespan.

Even though we already started to find some in worms, and later in yeast and flies, people were saying, oh, those are simple organisms, it’s not going to be true in mammals. Turns out, it is true, there are drugs that extend life span in mice, maybe even humans.

There are genetic mutations that are associated with long lifespan in mice and humans. And so, even though aging is a complex process, there must be nodes or integration points that you can hit that will alter the whole system so that it stays healthy longer. There’s a lot of effort right now, especially in the private sector, to try to develop something that hits every hallmark, and then you can put it all together and have a massive effect on aging.

I doubt it’s going to be that simple. The challenge is that it’s not so easy to figure out what you can combine together to get bigger effects. That’s already something we see in our lab. We’ve combined a lot of interventions in mice, and I can’t predict what’s additive and what’s not. So, I get a little bit nervous when I hear people talking about all kinds of different supplements, because when you start adding things together, it leads to unpredictable outcomes.

Generally, I think, it’s fine if people want to be early adopters and try certain things as long as they’re safe, but when you’re taking three or four different things, especially at high doses, there’s no way to know what’s happening.

Frankly, I can’t really figure out how I should feel about this interconnectedness and complexity. Should this make me feel more optimistic or more pessimistic as to our ability to fight aging?

It’s a good question, but you can also say, did we get all the hallmarks and pillars right? Most probably, they weren’t exhaustive, and we’re now trying to go back and write another review, trying to think about what was missed, and other people have done this as well since those two original papers.

What does that network structure look like? It’s easy to say “network”. It’s like systems biology: everybody talks about it, but nobody can define it. We’re reaching that point, and that’s also why the AI stuff is starting to lead the way because AI doesn’t really care about mechanisms of action, but it can take complex data sets and distill something out of it that’s effective.

Does this black box approach scare you a bit?

I don’t know if it scares me. I mean, we’re doing it, and I think it’s the right approach, but I also find it a little bit depressing. I miss those days in yeast aging research where you could come up with an elegant experiment to test a specific hypothesis and you would find that the sirtuin protein complex re-localizes to the rDNA and that’s what affects aging.

There was a lot of satisfaction in this, and those results, even if they were a bit naive, retrospectively, you felt like you were learning something that was tangible. Now, we get AI data and it’s telling us something, and when we test it, it often validates, but we still can’t explain why. I can’t tell you why any intervention works, and that’s a bit frustrating.

This interconnectedness is probably the reason why many geroprotective drugs work more or less along the same lines, but AKG seems to be your molecule of choice. What makes it special?

I’m happy to tell you about alpha-ketoglutarate, but before I do that, I have to say that in Singapore, we’re testing many kinds of interventions and starting to combine them together in animal models. Working with Andrea Meyer, we’re starting to do human intervention studies as well, and we’re trying to be agnostic there. We will test AKG, of course, but there’s others too. We want to test five or ten things side by side and start comparing what works on which biomarkers and in which people.

Alpha-ketoglutarate is a central metabolite in the TCA cycle [Krebs cycle]. It’s involved in respiration, in amino acid metabolism and anabolism. It’s a center point of many different metabolic pathways. Its levels go down with aging. As was first shown in a paper in Nature, when you give it to worms, it extends their lifespan quite dramatically. Working with Gordon Lithgow, we were able to see that as well, and so, we started testing it. We saw that it really compresses morbidity in mice. It extends lifespan by a little bit, but it reduces frailty by up to 50%. That’s an exciting molecule in my book.

We recently published a human paper on it, but it wasn’t a controlled clinical study. Let me give you the caveats first. There’s no placebo control. It’s people buying the product and doing a baseline DNA methylation test and a follow-up around seven months later. It’s a relatively simple methylation test, but at the time it was the only one we could use, because all you need is a piece of paper. You put saliva on the paper and send it back in. It was a lot simpler than a blood draw or anything like that. What we found is that you could reduce biological age by seven or eight years according to that assay, which I think is exciting.

The company that sponsors the Rejuvant product is called PDL Health [Ponce de Leon Health]. They’re doing a placebo-controlled clinical study at Indiana University which is nearing completion, and we should have some data from that study very shortly. Then, we’re planning to do a sustained release AKG-only study in Singapore. Rejuvant, in addition to AKG, contains low-dose vitamin A for men and low-dose vitamin D for women. That’s what the published paper is about, but we want to see specifically what AKG is doing, because we think we can glean more mechanistic insights from that.

We need to be a little careful with these clinical studies that are still in their early days. We’re just beginning to use biomarkers as end points, and there’s probably a placebo effect too. I suspect that if you’re buying a product and paying for it, you probably become biologically younger by a couple of years.

It will be interesting to see how things operate against the controls and look at immune parameters, metabolic parameters, etc. We’re very excited about that data.

We at lifespan.io covered this study, and the results are exciting indeed. Now, how do you see a possible timeline for anti-aging interventions – say, small molecules versus the more radical approaches such as gene therapy?

Lifestyle changes are here; you can do them now. We don’t know everything, and we probably don’t know as much as we think we know, and when it comes to diet and longevity, there’s still a lot of debate. Everybody thinks exercise is good, but which kinds of exercise for which people is still kind of a question. Natural products are almost here. If you’re an early adopter, you can buy these things now – not just Rejuvant, but NAD precursors, and a whole range of other things that are tested to varying extents.

Repurposing drugs is really starting to be tested. We certainly want to look at a rapalog in our studies.  I’m sure you know about the TAME trial with metformin. Those are not necessarily that far from the market. The only concern I have is that, like with the TAME trial, the FDA said, well, we’re excited to see if this is going to affect healthspan, but that doesn’t mean they’re going to move super quickly, like with the coronavirus. Even if you get positive results, it’s still going to take time. But we’re moving toward that.

Most companies developing new chemical entities right now are trying to target them towards specific diseases or aspects of aging. I guess that’s a necessity. I’m not sure it’s my favorite choice, but I understand why they’re doing it, so the process is going to be longer. Then, you have things like stem cell therapy, gene therapy, young blood, and a whole range of other types of interventions.

What is your opinion on senolytics?

Senolytics, I think, are intriguing, though there are some challenges. One type of senolytics are drugs that have been repurposed, and some of them have toxicity issues. The other type is natural products, safer drugs that people like Jim Kirkland are using and they’re targeting them towards specific diseases of aging.

I certainly think that cell senescence is a component of the aging process, but it’s still unclear to me how big a component. Some people want to put it at the center of the pillars or hallmarks of aging. I’m not quite ready to do that, but certainly, if we can effectively remove senescent cells, there will be many benefits to that. So, it’s an exciting pathway to look at.

What is your take on the effect of compressed morbidity? Is this the best we can hope for?

I think that in many cases, it’s not even there. I don’t see that much of it in the invertebrate models. There, if you extend median life span, you extend maximum life span, and if you can measure healthspan parameters, they’re extended as well, for the most part. We’re starting to see that with some mouse models.

I also think that’s what you get from exercise. I don’t know whether this will affect maximum lifespan that much, but exercise gives you a much better chance of getting closer to it, because by exercising, you’re avoiding some of the behaviors that lead to earlier stage breakdown of aging pathways and disease onset. In other words, there are many different things that can drive disease onset, and you can accelerate that based on your behaviors.

Even with mice, we don’t give them the healthiest diets all the time. We don’t let them exercise that much. We keep them under stress conditions. Maybe some of the interventions that we think are anti-aging are actually helping with the lifestyle of the animal rather than affecting the maximum lifespan.

I think, for now, that’s fine. If we can extend healthspan 5-10 years, even with no effect on maximum lifespan, that’s still a major victory, both in terms of quality of life and economic benefit. The things that can extend maximum lifespan are more interesting to think about, and I would argue that it’s certainly possible. We can do it in all the other animal models, but right now, the evidence suggests that maximum lifespans are not going up that much in humans, even though median lifespan is.

It’s unclear how easy it’s going to be to affect maximum lifespan. I think, ultimately, it’s possible, but whether the interventions we’re looking at now are evening out the bad things that are happening or whether they’re really slowing down the intrinsic aging process, which would lead to extending maximum lifespan, is still an open question.

Recently, you became a founding member of LBA – Longevity Biotechnology Association. We covered their launch extensively, and we are very excited about this initiative.

I’d like to hear your take on this – why do we need it, how is it different from some other initiatives in the longevity field, has something been happening since the launch?

I think there’s now a little bit of trying to figure out how best to structure the association so that it can have the most impact. There’s a growing private sector in longevity right now. It’s a good thing, but it’s kind of a Wild West. You got money flowing in all directions, people with all kinds of different ideas on both diagnostics of age and interventions, clinics are opening up. We need an association that can bring all that together and get the government involved so that they understand this revolution that’s happening. Certainly, the motivations of the association are great, and I’m just trying to help in any way I can, but I also think it’s going to take some time to figure out how to do this in the most effective way.

As a co-editor of Aging Cell, what do you think about what appears to be sort of a reproducibility crisis in biology? How severe is it, and do you think that maybe the whole publishing system needs updating, say, in terms of incentives to scientists?

Aging Cell has no problems, it’s always the other journals. I’m joking, of course. I do think there’s a problem with publishing right now. There are several things. For one, the most important papers are not necessarily getting published in the top journals because there’s too much emphasis on a person’s reputation rather than the science they’re putting out there. There’s also certainly a lot of motivation to get positive results, and I think that can bias how a person does experiments and interprets the data. I think the vast majority of scientists are trying to learn the truth, but it’s easy to convince yourself of something without all the controls in place.

I also think that the publication process is just taking too long. One change I would suggest is that we shouldn’t have multiple rounds of review of a paper. When somebody submits a paper, the reviewers can say whatever they want, suggest experiments, change things, edit, whatever. And then the author responds to that. At that point, I think the reviewer shouldn’t be suggesting more experiments. They should just say if it’s good enough or not good enough.

Particularly if you want a paper in one of the top journals, it can now take a year and a half to get it published. This is not serving anybody. We need to be disseminating scientific knowledge quickly. I’m perfectly happy with a paper that says, here’s the data, this is our favorite interpretation of it, but here are the weaknesses of the paper as well, and these are other potential interpretation. I think that’s fine. The problem is, if you’re not willing to put in those weaknesses, it can be misleading.

I also think we have to realize that biology is not a system where we can reduce the variables sufficiently to guarantee that we’re all doing the same experiment. We’ve seen this with the ITP program, which is an intervention testing program studying longevity interventions in mice through the National Institute of Aging. There are three different sites, all very good scientific sites, all do very well-controlled experiments, but they’ve had cases where rapamycin extends lifespan here but not there, and they traced it all the way back to the food source or some other issue.

Reproducibility is not always easy, even if you have great scientists involved. There are just a lot of variables, especially in a long-term study in a mammal. Not everybody’s going to get the same result, and when they don’t, it’s not the time to start having a fight. What we need to be doing is sorting out what the reasons are, why there was something that works here and doesn’t work there.

When you have disagreeing data, the answer is usually somewhere in the middle. I don’t think we should shy away from data that’s contradictory. It’s an opportunity to sort out the details and understand more.

Do you think that the system may be guiding scientists towards “torturing the data until it confesses” or not publishing negative results? Is it a genuine problem?

Not publishing negative results is a big problem, and we always try to do that, though we have negative results that we haven’t published too, and there are a couple of reasons for that. One is you get limited value for publishing negative data. I really liked when PLOS One started several years ago because it was a site where you could publish negative data. We published a bunch of papers there, and other people have too.

The other side of it… let’s say you’re testing 10 different interventions in mice. You’re often not doing it to the same extent than if you were only testing one intervention. You may have less mice, less doses of the small molecule, et cetera. Then, you don’t get it resolved, and the data is not good enough to publish. That was your pilot experiment, and if you want to make it good enough to publish, you have to go back and do it on a much larger scale.

Are you really going to put a large investment into something that you think will give you a negative result? No, you choose the most promising intervention, and this is how the negative data doesn’t get published. Some of it is intrinsic to the process. I do think we should do a better job of getting negative data out there, but again, I don’t recommend using it to say that this or that person is definitely wrong. The important point is: OK, we tried this experiment under these conditions, and it didn’t work. Somebody else tried to do this, and it worked, so let’s try to find out what’s going on.

I noticed that you did your BA in mathematics, and I’d say that this kind of shows. Do you think this clear, logical thinking, this mathematical approach is what biology is still lacking, like the famous 2002 article “Can a biologist fix a radio” postulates?

I do think it’s lacking and it’s lacking in me too – for instance, I’m not an AI expert, I have to bring in people that know what they’re doing. I don’t write code. I had a biochemistry degree too, so the math to me was something that I could get relatively easily, with a few more classes based on the program I was in. I just took classes that were fun, like the set theory, abstract algebra, a lot of logic courses. And I think it’s helped me a lot, though I probably should have taken some statistics.

Yes, a lot of biologists are not well-versed in math, and now we’re entering a new world where you need those skills. It’s a transition right now. Maybe I’m part of the way to that transition. You know, the people making the discoveries in biomedicine 10 years from now may look very different than the people doing it today.

I understand you’re an avid runner. Does this hobby have something to do with life extension? What else do you do to keep aging at bay?

I also try to eat reasonably healthy and to have one big meal a day, and, as you said, I’m a runner. I think managing stress is really important. We all live stressful lives, but it’s what you do with the stress that is important and how it affects your body. Of course, sleep quality is important, though that’s hard to manage. I always told people that I’m not going to try any interventions until I’m 50, and then I became 50, so that excuse didn’t work anymore, and now I’m now trying Rejuvant because I’m involved with the company.

Do you have any anecdotal evidence to share?

I think it helped my exercise performance, and actually, there’s a long list of people adopting AKG that are either endurance athletes or resistance trainers. They think it’s because it drives amino acid production. I’m not sure that’s the mechanism, but I definitely felt like I could do better endurance exercise when I was taking AKG.

By the way, isn’t it interesting that AKG seems to help muscle building, while for metformin we have some data suggesting that it may have some adverse effects on this?

I think that they probably work through different mechanisms, but we need to study metformin deeper to really understand its role in skeletal muscle. Some studies suggest that people that are exercising don’t gain the muscle mass if they’re taking metformin. Nir Barzilai has a lot of reasons for why that might be the case. We need to understand that better.

Certainly, building muscle mass is very good for aging. In fact, if you look at people who are overweight, as long as they have relatively high lean muscle mass, they’re pretty protected.

Which directions excite you in the longevity field today?

I think the big excitement over the last several years has been the development of biomarkers of aging. I don’t think they’re perfect, but things like methylation clocks are really allowing us to get an estimate of how fast a person is aging – something that was never feasible, especially in younger people.

This was the excitement, and now it’s about applying it, testing interventions with people and trying to validate that they really affect biological age. People have been trying to slow aging for millennia, and we’re at a point now where we’re going to be able to validate that it’s possible with interventions that directly target aging. I’m very excited to see that happening in the next few years.

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Parkinson's

Key Parkinson’s Protein Required for Immune Function

A study published in Cell Reports has found α-synuclein, the fundamental protein of Parkinson’s disease, to be critical in immune function.

The gut-brain axis as a channel for disease

Parkinson’s disease, which causes damage to the portion of the brain responsible for movement, is widely known to be caused by the aggregation of α-synuclein. This protein is produced naturally by multiple tissues, including the peripheral and central nervous systems [1].

A few years ago, one study revealed that long before Parkinson’s manifests itself in the brain, the a-synuclein protein causes constipation as a result of damage to the enteric nervous system (ENS), which is responsible for the smooth functioning of the gastrointestinal system [2]. Other, similarly recent, studies have found that α-synuclein is taken up through the central nervous system, traveling through the vagus nerve and ultimately into the brain [3,4].

A protein with a reason to exist

In its natural form, this protein is neither an unwanted byproduct nor a consequence of malfunctioning protein production. Instead, it is produced by healthy, normally functioning cells, and it has been shown to be have an inflammatory effect in a previous in vitro study, attracting both human and murine neutrophils [5].

For this study, the researchers decided to take these results further by analyzing its effects in vivo. When a bacterial toxin was introduced into their intestines, mice that were genetically engineered to produce additional a-synuclein showed a much more robust immune response than mice that were engineered to produce none.

Whether examined 4 hours or 24 hours after the irritant was administered, multiple types of immune cells, along with the inflammatory factors IL-1ß and TNFα, were found in far greater quantities in the mice that produced α-synuclein. Similarly, mice with α-synuclein were also shown to better detect potential threats and fight them, recruiting more immune cells to where they were needed. In total, mice that did not produce α-synuclein had a fundamental immune system deficiency compared to mice that did.

In line with the murine results, α-synuclein was shown to drive macrophages towards the M1 (inflammatory) type in vitro. It was shown to drive the maturation of dendritic cells, the immune cells responsible for detecting antigens, and stimulated the production and differentiation of CD4+ T cells.

Conclusion

This study illustrates one of the downsides of biology research: there are very few things that are entirely bad and need to be removed completely. While this protein is the driver of Parkinson’s disease and obviously drives inflammation, its inflammatory quality is what makes it so necessary in the immune system. It is reasonable to believe that any compound that destroys α-synuclein entirely would also have a side effect of placing people at greater risk of contracting deadly infectious diseases.

Instead, just as we need to be able to modulate inflammatory responses as a whole in order to ameliorate the age-related increase in inflammation known as inflammaging, discovering a way to modulate α-synuclein in particular would potentially allow us to reduce unwanted gut inflammation, prevent damage to the enteric nervous system, and stop Parkinson’s disease before it starts.

We would like to ask you a small favor. We are a non-profit foundation, and unlike some other organizations, we have no shareholders and no products to sell you. All our news and educational content is free for everyone to read, but it does mean that we rely on the help of people like you. Every contribution, no matter if it’s big or small, supports independent journalism and sustains our future.

Literature

[1] Bartels, T., Choi, J. G., & Selkoe, D. J. (2011). a-Synuclein occurs physiologically as a helically folded tetramer that resists aggregation. Nature, 477(7362), 107-110.

[2] Rota, L., Pellegrini, C., Benvenuti, L., Antonioli, L., Fornai, M., Blandizzi, C., … & Colla, E. (2019). Constipation, deficit in colon contractions and alpha-synuclein inclusions within the colon precede motor abnormalities and neurodegeneration in the central nervous system in a mouse model of alpha-synucleinopathy. Translational neurodegeneration, 8(1), 1-15.

[3] Breit, S., Kupferberg, A., Rogler, G., & Hasler, G. (2018). Vagus nerve as modulator of the brain–gut axis in psychiatric and inflammatory disorders. Frontiers in psychiatry, 9, 44.

[4] Kim, S., Kwon, S. H., Kam, T. I., Panicker, N., Karuppagounder, S. S., Lee, S., … & Ko, H. S. (2019). Transneuronal propagation of pathologic a-synuclein from the gut to the brain models Parkinson’s disease. Neuron, 103(4), 627-641.

[5] Stolzenberg, E., Berry, D., Yang, D. E., Lee, E. Y., Kroemer, A., Kaufman, S., … & Zasloff, M. A. (2017). A role for neuronal alpha-synuclein in gastrointestinal immunity. Journal of innate immunity, 9(5), 456-463.